Publications
2025
Geometry-aware template matching for cryo-electron tomograms in Dynamo
Structure. 2025 Sep 4;33(9):1591-1602.e3. doi: 10.1016/j.str.2025.06.009. Epub 2025 Jul 17. PMID: 40680749.
Machine Learning Approach for Predicting Drug-Like Molecules Targeting Calmodulin Pathway Proteins
J Chem Inf Model. 2025 Nov 10;65(21):11892-11907. doi: 10.1021/acs.jcim.5c02111. Epub 2025 Oct 22. PMID: 41125631; PMCID: PMC12606648.
First report on Quantitative Structure-Toxicity Relationship modeling approaches for predicting acute toxicity of organic chemicals against rotifer species
Sci Total Environ. 2025 May 15;977:179350. doi: 10.1016/j.scitotenv.2025.179350. Epub 2025 Apr 10. PMID: 40215635.
The critical roles of bioactive sphingolipids in inflammation
J Biol Chem. 2025 Aug;301(8):110475. doi: 10.1016/j.jbc.2025.110475. Epub 2025 Jul 11. PMID: 40653199; PMCID: PMC12340401.
Artificial Intelligence-Driven Modeling for Hydrogel Three-Dimensional Printing: Computational and Experimental Cases of Study
Polymers (Basel). 2025 Jan 6;17(1):121. doi: 10.3390/polym17010121. PMID: 39795524; PMCID: PMC11723248.
BiaPy: accessible deep learning on bioimages
Nat Methods 22, 1124–1126 (2025). https://doi.org/10.1038/s41592-025-02699-y
Engineering a single-chain immunoglobulin scaffold loaded with a latent-releasable cytotoxic pore-forming peptide
Commun Biol. 2025 Nov 25;8(1):1665. doi: 10.1038/s42003-025-09066-9. PMID: 41291002; PMCID: PMC12647727.
Label-free metabolic fingerprinting of motile mammalian spermatozoa with subcellular resolution
BMC Biol. 2025 Mar 24;23(1):85. doi: 10.1186/s12915-025-02167-1. PMID: 40128804; PMCID: PMC11934609.
The puzzle of sphingolipids and cholesterol under the atomic force microscope: bilayer thicknesses and breakthrough forces
Chem Phys Lipids. 2025 Sep;271:105527. doi: 10.1016/j.chemphyslip.2025.105527. Epub 2025 Jul 15. PMID: 40675432.
Nanoscale Analysis beyond Imaging by Atomic Force Microscopy: Molecular Perspectives on Oncology and Neurodegeneration
Small Sci. 2025 Oct 12;5(11):2500351. doi: 10.1002/smsc.202500351. PMID: 41256193; PMCID: PMC12622512.
The integrity of the lipid bilayer structure is retained in natural occurring deep eutectic solvent water mixtures - a small angle X-ray scattering study
Phys Chem Chem Phys. 2025 May 14;27(19):10248-10258. doi: 10.1039/d5cp00331h. PMID: 40310971.
The role of artificial intelligence in implant dentistry: a systematic review
Int J Oral Maxillofac Surg. 2025 May 28:S0901-5027(25)00118-3. doi: 10.1016/j.ijom.2025.04.005. Epub ahead of print. PMID: 40436717.
Selective cargo and membrane recognition by SNX17 regulates its interaction with Retriever
EMBO Rep. 2025 Jan;26(2):470-493. doi: 10.1038/s44319-024-00340-1. Epub 2024 Dec 9. PMID: 39653850; PMCID: PMC11772769.
Quantum Tunneling Fingerprints of Chirality-Induced Symmetry Preferences in Methyl Lactate Dimer
J Am Chem Soc. 2025 May 21;147(20):17002-17009. doi: 10.1021/jacs.5c01184. Epub 2025 Apr 16. PMID: 40237444.
Engineering plasma membrane mimics: general discussion
Faraday Discuss. 2025 Aug 13;259(0):182-199. doi: 10.1039/d5fd90019k. PMID: 40748046.
Long-term memory in lipid assemblies: Rate-independent hysteresis in the ripple-to-liquid-disordered transition of sphingomyelin bilayers
J Chem Phys. 2025 Apr 7;162(13):135101. doi: 10.1063/5.0252051. PMID: 40167004.
Substrate stiffness and pressure alter retinal Müller glia response and extracellular matrix production
Biomater Biosyst. 2025 Jul 7;19:100114. doi: 10.1016/j.bbiosy.2025.100114. PMID: 40687493; PMCID: PMC12275231.
Evolution of Hydrogen-Bonding Networks in Glycerol Dimer and Trimer: How Close Are They to Water Clusters?
J Am Chem Soc. 2025 Nov 26;147(47):43350-43357. doi: 10.1021/jacs.5c09108. Epub 2025 Nov 14. PMID: 41234137
Metabolic coordination and phase transitions in spatially distributed multi-cellular systems
Commun Phys 8, 205 (2025). https://doi.org/10.1038/s42005-025-02133-x
Lentiviral Vectors: From Wild-Type Viruses to Efficient Multi-Functional Delivery Vectors
Int J Mol Sci. 2025 Sep 1;26(17):8497. doi: 10.3390/ijms26178497. PMID: 40943418; PMCID: PMC12429303.
2026
Synthetic Point Cloud Generation for Autonomous Driving: A Survey and Taxonomy
IEEE Intelligent Transportation Systems Magazine 2026. doi: 10.1109/MITS.2026.3653178
Tertiary and quaternary structure remodeling by occupancy of the substrate binding pocket in a large glutamate dehydrogenase
Protein Sci. 2026 Apr;35(4):e70544. doi: 10.1002/pro.70544.
Continuum architecture dynamics of vesicle tethering in exocytosis
Cell. 2026 Feb 19;189(4):1170-1184.e22. doi: 10.1016/j.cell.2025.11.038. Epub 2026 Jan 16. PMID: 41547355.
Colloidal stability and aggregation of polyethylene (PE) nanoplastics under UV weathering and PFOA contamination
Environ Sci Process Impacts. 2026 May 27;28(5):1407-1419. doi: 10.1039/d6em00112b.
Twin-compartment solid–liquid cells for neutron reflectometry
Journal of Applied Crystallography 2026. doi: 10.1107/S1600576726000919
Identification of cellular ion channels that facilitate Hazara nairovirus infection enables selection of clinically approved compounds with anti-nairoviral properties
Sci Rep. 2026 Mar 24;16(1):14840. doi: 10.1038/s41598-026-42810-7.
Sequencing and functional characterization of SCARB1 variants in subjects with extreme HDL cholesterol levels
J Clin Lipidol. 2026 Feb;20(2):389-401. doi: 10.1016/j.jacl.2025.11.017. Epub 2025 Dec 1. PMID: 41486059.
Differential equilibration in cis- and trans-ceramide monolayers: A molecular dynamics study
J Chem Phys. 2026 May 14;164(18):185102. doi: 10.1063/5.0322180
Structure and composition of supported lipid bilayers: a comparison between solvent-assisted lipid bilayer and vesicle fusion methods
Journal of Applied Crystallography 2026. doi: 10.1107/S1600576726000312
Interactions between the 2C protein of FMDV and components of the viral replication machinery are mediated by ER-derived membranes
J Gen Virol. 2026 May;107(5):002244. doi: 10.1099/jgv.0.002244
Structural insights into the antibacterial function of the Pseudomonas putida effector Tke5
EMBO J. 2026 Feb;45(4):1229-1244. doi: 10.1038/s44318-025-00689-6. Epub 2026 Jan 12. PMID: 41526723; PMCID: PMC12909789.
mcstas_gisans: combining ray tracing with the distorted-wave Born approximation using McStas and BornAgain for virtual GISANS experiments
J Appl Crystallogr. 2026 Apr 22;59(Pt 3):827-836. doi: 10.1107/S160057672600213X.
Calmodulin assists during co-translational folding of the KV7.2 channel calcium responsive domain
Protein Sci. 2026 May;35(5):e70552. doi: 10.1002/pro.70552. PMID: 41949262; PMCID: PMC13059092.
Two-dimensional HRS condensates drive the assembly of flat clathrin lattices on endosomes
Nat Commun. 2026 May 12;17(1):6336. doi: 10.1038/s41467-026-73132-x
Structural remodeling of the mitochondrial protein biogenesis machinery under proteostatic stress
Sci Adv. 2026 Mar 6;12(10):eaed3579. doi: 10.1126/sciadv.aed3579. Epub 2026 Mar 4. PMID: 41779846; PMCID: PMC12959407.
Complex Structural Examination of Protein–Lipid Interactions with Neutron Scattering Techniques
Methods Mol Biol. 2026;3001:189-247. doi: 10.1007/978-1-0716-5054-7_11.
The instrument suite and science case for ARGITU, the Spanish high-current accelerator-driven neutron source
Journal of Applied Crystallography 2026. doi: 10.1107/S1600576726001780
Structural, functional and biochemical characterisation of apolipoprotein(a)-containing low-density lipoproteins
J Colloid Interface Sci. 2026 Jan;701:138760. doi: 10.1016/j.jcis.2025.138760. Epub 2025 Aug 18. PMID: 40845449.
Structural insights into a conserved mechanism of choline translocation through CHT
CHT. Sci Adv. 2026 May 29;12(22):eaec1241. doi: 10.1126/sciadv.aec1241.
Drift detection on feature attributions for monitoring visual reinforcement learning models in maritime port surveillance
Open Res Eur. 2026 Jan 2;6:2. doi: 10.12688/openreseurope.22116.1. PMID: 41624957; PMCID: PMC12859422.