Publications
2024
Machine learning analysis of a large set of homopolymers to predict glass transition temperatures
Commun Chem. 2024 Oct 2;7(1):226. doi: 10.1038/s42004-024-01305-0. PMID: 39358434; PMCID: PMC11447034.
On the geometric and analytical properties of the anharmonic oscillator
Communications in Nonlinear Science and Numerical Simulation, Volume 131, 2024,
107875. Doi: 10.1016/j.cnsns.2024.107875Structural basis for regulation of a CBASS-CRISPR-Cas defense island by a transmembrane anti-σ factor and its ECF σ partner
Sci Adv. 2024 Oct 25;10(43):eadp1053. doi: 10.1126/sciadv.adp1053. Epub 2024 Oct 25. PMID: 39454004; PMCID: PMC11506125.
Selective cargo and membrane recognition by SNX17 regulates its interaction with Retriever
EMBO Rep. 2024 Dec 9. doi: 10.1038/s44319-024-00340-1. Epub ahead of print. PMID: 39653850.
MATEO: InterMolecular α-Amidoalkylation Theoretical Enantioselectivity Optimization. Online Tool for Selection and Design of Chiral Catalysts and Products
J Cheminform 16, 9. 2024. Doi:10.1186/s13321-024-00802-7
Lipid Exchange of Apolipoprotein A-I Amyloidogenic Variants in Reconstituted High-Density Lipoprotein with Artificial Membranes.
Protein Sci. 2024 May;33(5):e4987. doi: 10.1002/pro.4987. PMID: 38607188; PMCID: PMC11010956.
Automatic mapping of aquaculture activity in the Atlantic Ocean
International Journal of Applied Earth Observation and Geoinformation,Volume 132,2024,104061.
Membrane Interaction Characteristics of the RTX Toxins and the Cholesterol-Dependence of Their Cytolytic/Cytotoxic Activity
Int J Mol Sci. 2024 Mar 8;25(6):3131. doi: 10.3390/ijms25063131. PMID: 38542105; PMCID: PMC10970614.
Understanding Aβ Peptide Binding toLipid Membranes. A BiophysicalPerspective
Int J Mol Sci. 2024 Jun 10;25(12):6401. doi: 10.3390/ijms25126401. PMID: 38928107; PMCID: PMC11203662.
NANO.PTML model for read-across prediction of nanosystems in neurosciences. computational model and experimental case of study
J Nanobiotechnology. 2024 Jul 23;22(1):435. doi: 10.1186/s12951-024-02660-9. PMID: 39044265; PMCID: PMC11267683.
Scenarios for the appearance of strange attractors in a model of three interacting microbubble contrast agents
Chaos, Solitons & Fractals, Volume 182, 2024, 114785, Doi: 10.1016/j.chaos.2024.114785
The unreasonable effectiveness of equilibrium gene regulation through the cell cycle
Cell Syst. 2024 Jul 17;15(7):639-648.e2. doi: 10.1016/j.cels.2024.06.002. Epub 2024 Jul 8. PMID: 38981487.
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota
Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. PMID: 39738071; PMCID: PMC11685898.
From molecular mechanisms of prostate cancer to translational applications: based on multi-omics fusion analysis and intelligent medicine
Review. Health Inf Sci Syst. 2024.12(1):6. Doi: 10.1007/s13755-023-00264-5.
pH-Dependent Interactions of Coacervate Forming Histidine-rich Peptide with Model Lipid Membranes.
Front. Soft Matter, 19 January 2024 Sec. Biological Soft Matter Volume 3 - 2023 Doi: 10.3389/frsfm.2023.1339496
Proteomics profiling reveals lipid metabolism abnormalities during oogenesis in unexplained recurrent pregnancy loss
Front Immunol. 2024 Aug 8;15:1397633. doi: 10.3389/fimmu.2024.1397633. PMID: 39176081; PMCID: PMC11339622.
2025
Supramolecular chemistry in solution and solid–gas interfaces: Synthesis and Photophysical Properties of Monocolor and Bicolor Fluorescent Sensors for Barium Tagging in Neutrinoless Double Beta DecayDecay
RSC Appl. Interfaces, 2025. DOI 10.1039/D4LF00227J
Picrotoxin-Induced Epileptogenic Hippocampal Organotypic Slice Cultures (hOTCs)
Neural Stem Cells. Methods in Molecular Biology, vol 2899. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-4386-0_23.
Cryo-EM uncovers a sequential mechanism for RNA polymerase I pausing and stalling at abasic DNA lesions
Nat Commun. 2025 Jun 6;16(1):5254. doi: 10.1038/s41467-025-60536-4. PMID: 40480971; PMCID: PMC12144180.
Determining the Molecular Shape of Progesterone: Insights from Laser Ablation Rotational Spectroscopy
J Phys Chem Lett. 2025 Feb 27:2425-2432. doi: 10.1021/acs.jpclett.4c03618. Epub ahead of print. PMID: 40013933.
Enhancing Generalization and Mitigating Overfitting in Deep Learning for Brain Cancer Diagnosis from MRI
Appl Magn Reson 56, 359–394 (2025). https://doi.org/10.1007/s00723-024-01743-y
A mathematical model of CAR-T cell therapy in combination with chemotherapy for malignant gliomas
Chaos. 2025 Jun 1;35(6):063104. doi: 10.1063/5.0260252. PMID: 40455204.
The interaction of human serum components with model membranes containing phospholipids and lipopolysaccharides
J Colloid Interface Sci. 2025 Jun 15;688:150-160. doi: 10.1016/j.jcis.2025.02.131. Epub 2025 Feb 20. PMID: 39999488.
Neuroglia in neurodegeneration: Alzheimer, Parkinson, and Huntington disease
Review. Handb Clin Neurol. 2025;210:9-44. doi: 10.1016/B978-0-443-19102-2.00012-0. PMID: 40148060.
AQUA Tox: A web tool for predicting aquatic toxicity in rotifer species using intrinsic explainable models
J Hazard Mater. 2025 Jul 15;492:138050. doi: 10.1016/j.jhazmat.2025.138050. Epub 2025 Mar 25. PMID: 40157185.
Electrophysiological dissection of the ion channel activity of the Pseudomonas aeruginosa ionophore protein toxin Tse5
Chem Phys Lipids. 2025 Mar;267:105472. doi: 10.1016/j.chemphyslip.2025.105472. Epub 2025 Jan 6. PMID: 39778700.
Chaperone-Driven Entropic Separation of Amyloid Nanofilament Bundles
Phys. Rev. X. 2025; 15;011041
Distinctive Membrane Accommodation Traits Underpinning the Neutralization Activity of HIV-1 Antibody against MPER
Mol Pharm. 2025 May 5;22(5):2494-2508. doi: 10.1021/acs.molpharmaceut.4c01341. Epub 2025 Apr 9. PMID: 40202993; PMCID: PMC12056697.
The interaction of human serum components with model membranes containing phospholipids and lipopolysaccharides
J Colloid Interface Sci. 2025 Jun 15;688:150-160. doi: 10.1016/j.jcis.2025.02.131. Epub 2025 Feb 20. PMID: 39999488.
Quasi-average predictions and regression to the trend: An application to the M6 financial forecasting competition
International Journal of Forecasting, 2025. doi: 10.1016/j.ijforecast.2024.12.006
A transient contractile seam promotes epithelial sealing and sequential assembly of body segments
Nat Commun. 2025 Apr 29;16(1):4010. doi: 10.1038/s41467-025-58566-z. PMID: 40301337; PMCID: PMC12041241.
Genetic Analysis and Predictive Modeling of COVID-19 Severity in a Hospital-Based Patient Cohort
Biomolecules. 2025 Mar 10;15(3):393. doi: 10.3390/biom15030393. PMID: 40149929; PMCID: PMC11940120.
Viroporins: discovery, methods of study, and mechanisms of host-membrane permeabilization
Review. Q Rev Biophys. 2025 Jan 14;58:e1. doi: 10.1017/S0033583524000192. PMID: 39806799.
Structural recognition and stabilization of tyrosine hydroxylase by the J-domain protein DNAJC12
Nat Commun. 2025 Mar 20;16(1):2755. doi: 10.1038/s41467-025-57733-6. PMID: 40113792; PMCID: PMC11926245.
Exploring the Anti-Chagas Activity of Zanthoxylum chiloperone's Seedlings Through Metabolomics and Protein-Ligand Docking
Plants (Basel). 2025 Mar 18;14(6):954. doi: 10.3390/plants14060954. PMID: 40265836; PMCID: PMC11946004.
Drug Release Nanoparticle Systems Design: Dataset Compilation and Machine Learning Modeling
ACS Applied Materials and Interfaces. Volume 17, Issue 3, Pages 5290 - 5306
A new class of type VI secretion system effectors can carry two toxic domains and are recognized through the WHIX motif for export
PLoS Biol. 2025 Mar 17;23(3):e3003053. doi: 10.1371/journal.pbio.3003053. PMID: 40096082.
First report on Quantitative Structure-Toxicity Relationship modeling approaches for predicting acute toxicity of organic chemicals against rotifer species
Sci Total Environ. 2025 May 15;977:179350. doi: 10.1016/j.scitotenv.2025.179350. Epub 2025 Apr 10. PMID: 40215635.
Artificial Intelligence-Driven Modeling for Hydrogel Three-Dimensional Printing: Computational and Experimental Cases of Study
Polymers (Basel). 2025 Jan 6;17(1):121. doi: 10.3390/polym17010121. PMID: 39795524; PMCID: PMC11723248.
Label-free metabolic fingerprinting of motile mammalian spermatozoa with subcellular resolution
BMC Biol. 2025 Mar 24;23(1):85. doi: 10.1186/s12915-025-02167-1. PMID: 40128804; PMCID: PMC11934609.