Publications
2024
Integrability of Oscillators and Transcendental Invariant Curves
Qual. Theory Dyn. Syst. 24, 26 (2025). https://doi.org/10.1007/s12346-024-01182-x
On the antimicrobial properties and endurance of eugenol and 2-phenylphenol functionalized sol-gel coatings
Heliyon. 2024 Apr 3;10(8):e29146. doi: 10.1016/j.heliyon.2024.e29146. PMID: 38628759; PMCID: PMC11016974.
Multifunctional curcumin-based polymer coating: A promising platform against bacteria, inflammation and coagulation
Colloids Surf B Biointerfaces. 2024 Sep;241:114048. doi: 10.1016/j.colsurfb.2024.114048. Epub 2024 Jun 22. PMID: 38954936.
Fluorometric Measurement of Calmodulin-Dependent Peptide–Protein Interactions Using Dansylated Calmodulin
Bio Protoc. 2024 Apr 5;14(7):e4963. doi: 10.21769/BioProtoc.4963. PMID: 38618173; PMCID: PMC11006803.
Ceramide regulation of autophagy: A biophysical approach
Biochim Biophys Acta Mol Cell Biol Lipids . 2024 Mar;1869(2):159444
On the additive artificial intelligence-based discovery of nanoparticle neurodegenerative disease drug delivery systems
Beilstein J Nanotechnol. 2024 May 15;15:535-555. doi: 10.3762/bjnano.15.47. PMID: 38774585; PMCID: PMC11106676.
Morphological and Biophysical Study of S100A9 Protein Fibrils by Atomic Force Microscopy Imaging and Nanomechanical Analysis
Biomolecules. 2024 Aug 31;14(9):1091. doi: 10.3390/biom14091091. PMID: 39334857; PMCID: PMC11429797.
The Influence of Lipid Electric Charge on the Binding of Aβ(1-42) Amyloid Peptide to Bilayers in the Liquid-Ordered State
Biomolecules. 2024 Mar 1;14(3):298. doi: 10.3390/biom14030298. PMID: 38540718; PMCID: PMC10967883.
Automated fiducial-based alignment of cryo-electron tomography tilt series in Dynamo
Structure. 2024 Jul 22:S0969-2126(24)00241-7. doi: 10.1016/j.str.2024.07.003. Epub ahead of print. PMID: 39079528.
Nanoscale dynamics of Dynamin 1 helices reveals squeeze-twist deformation mode critical for membrane fission
Proc Natl Acad Sci U S A. 2024 Dec 3;121(49):e2321514121. doi: 10.1073/pnas.2321514121. Epub 2024 Nov 27. PMID: 39602273.
Unlocking a new hydrogen-bonding marker: C-O bond shortening in vicinal diols revealed by rotational spectroscopy
J Chem Phys. 2024 Apr 21;160(15):154304. doi: 10.1063/5.0203123. PMID: 38624119.
EMhub: a web platform for data management and on-the-fly processing in scientific facilities
Acta Crystallogr D Struct Biol. 2024 Nov 1. doi: 10.1107/S2059798324009471. Epub ahead of print. PMID: 39373194.
Mechanism for Vipp1 spiral formation, ring biogenesis and membrane repair
Nat Struct Mol Biol. 2025 Mar;32(3):571-584. doi: 10.1038/s41594-024-01401-8. Epub 2024 Nov 11. PMID: 39528797; PMCID: PMC11919738.
Fluorescence microscopy shadow imaging for neuroscience
Front Cell Neurosci. 2024 Feb 15;18:1330100. doi: 10.3389/fncel.2024.1330100. PMID: 38425431; PMCID: PMC10902105.
Computational method for designing vaccines applied to virus-like particles (VLPs) as epitope carriers
Vaccine. 2024 Jul 11;42(18):3916-3929. doi: 10.1016/j.vaccine.2024.05.025. Epub 2024 May 22. PMID: 38782665.
Generation of a Nonbilayer Lipid Nanoenvironment after Epitope Binding Potentiates Neutralizing HIV-1 MPER Antibody
ACS Appl Mater Interfaces. 2024 Oct 24. doi: 10.1021/acsami.4c13353. Epub ahead of print. PMID: 39446590.
2025
Quasi-average predictions and regression to the trend: An application to the M6 financial forecasting competition
International Journal of Forecasting, 2025. doi: 10.1016/j.ijforecast.2024.12.006
PTML models of self assembled ligand free nanoparticle catalysts for cross coupling reactions
Sci Rep. 2025 Aug 14;15(1):29895. doi: 10.1038/s41598-025-14080-2. PMID: 40813882; PMCID: PMC12354725.
Transition transferases prime bacterial capsule polymerization
Nat Chem Biol. 2025 Jan;21(1):120-130. doi: 10.1038/s41589-024-01664-8. Epub 2024 Jul 1. PMID: 38951648; PMCID: PMC11666461.
The architecture of membrane structures involved in hepatitis C virus genome replication revealed under close-to-native conditions by cryo-electron tomography
J Gen Virol. 2025 Nov;106(11). doi: 10.1099/jgv.0.002168. PMID: 41196697.
A transient contractile seam promotes epithelial sealing and sequential assembly of body segments
Nat Commun. 2025 Apr 29;16(1):4010. doi: 10.1038/s41467-025-58566-z. PMID: 40301337; PMCID: PMC12041241.
Hydrogen-bond-assisted conformational selection of picaridin in the gas phase
Phys Chem Chem Phys. 2025 Jul 17;27(28):15222-15227. doi: 10.1039/d5cp02108a. PMID: 40613745.
Rotational Spectrum and Search for Lactonitrile toward Sgr B2(N)
The Astrophysical Journal 2025 feb 981 64. Doi: 10.3847/1538-4357/adad54
Genetic Analysis and Predictive Modeling of COVID-19 Severity in a Hospital-Based Patient Cohort
Biomolecules. 2025 Mar 10;15(3):393. doi: 10.3390/biom15030393. PMID: 40149929; PMCID: PMC11940120.
IFE.PTML: Advancing Neurotherapeutic Nanoparticle Release-System Design for Enhanced Brain Delivery
Mach. Learn.: Sci. Technol. 2025 6 035065. Doi: 10.1088/2632-2153/ae038a
Viroporins: discovery, methods of study, and mechanisms of host-membrane permeabilization
Review. Q Rev Biophys. 2025 Jan 14;58:e1. doi: 10.1017/S0033583524000192. PMID: 39806799.
Cognitive and Adaptive Functioning of CTNNB1 Syndrome Patients: A Comparison With Autism Spectrum Disorder and Cerebral Palsy
J Intellect Disabil Res. 2025 Jul;69(7):558-568. doi: 10.1111/jir.13235. Epub 2025 Mar 27. PMID: 40145647; PMCID: PMC12198099.
Karyopherins Remodel the Dynamic Organization of the Nuclear Pore Complex Transport Barrier
Nat Cell Biol. 2025 Dec;27(12):2089-2101. doi: 10.1038/s41556-025-01812-9. Epub 2025 Dec 2. PMID: 41331088; PMCID: PMC12717009.
Structural recognition and stabilization of tyrosine hydroxylase by the J-domain protein DNAJC12
Nat Commun. 2025 Mar 20;16(1):2755. doi: 10.1038/s41467-025-57733-6. PMID: 40113792; PMCID: PMC11926245.
Ceramide and the membrane-fusion activity of LC3/GABARAP autophagy proteins
Cell Mol Life Sci. 2025 Jul 19;82(1):283. doi: 10.1007/s00018-025-05811-9. PMID: 40682660.
Core-excited microsecond isomer in 207Pb
Physical Review C. American Physical Society (APS). 2025 Aug 1. doi: 10.1103/6l8p-cblc
Exploring the Anti-Chagas Activity of Zanthoxylum chiloperone's Seedlings Through Metabolomics and Protein-Ligand Docking
Plants (Basel). 2025 Mar 18;14(6):954. doi: 10.3390/plants14060954. PMID: 40265836; PMCID: PMC11946004.
Hierarchical Structural Organization in Bioinspired Peptide Coacervate Microdroplets
ACS Nano. 2025 Oct 14;19(40):35724-35739. doi: 10.1021/acsnano.5c12015. Epub 2025 Sep 30. PMID: 41025298.
Drug Release Nanoparticle Systems Design: Dataset Compilation and Machine Learning Modeling
ACS Applied Materials and Interfaces. Volume 17, Issue 3, Pages 5290 - 5306
A resurrected ancestor of Cas12a expands target access and substrate recognition for nucleic acid editing and detection
Nat Biotechnol. 2025 Oct;43(10):1663-1672. doi: 10.1038/s41587-024-02461-3. Epub 2024 Oct 31. PMID: 39482449.
Genotype-phenotype characterization and functional reconstitution of pathogenic β-catenin variants from CTNNB1 syndrome patients
PLoS Genet. 2025 Oct 13;21(10):e1011907. doi: 10.1371/journal.pgen.1011907. PMID: 41082542; PMCID: PMC12543288.
A new class of type VI secretion system effectors can carry two toxic domains and are recognized through the WHIX motif for export
PLoS Biol. 2025 Mar 17;23(3):e3003053. doi: 10.1371/journal.pbio.3003053. PMID: 40096082.
Geometry-aware template matching for cryo-electron tomograms in Dynamo
Structure. 2025 Sep 4;33(9):1591-1602.e3. doi: 10.1016/j.str.2025.06.009. Epub 2025 Jul 17. PMID: 40680749.
Machine Learning Approach for Predicting Drug-Like Molecules Targeting Calmodulin Pathway Proteins
J Chem Inf Model. 2025 Nov 10;65(21):11892-11907. doi: 10.1021/acs.jcim.5c02111. Epub 2025 Oct 22. PMID: 41125631; PMCID: PMC12606648.
First report on Quantitative Structure-Toxicity Relationship modeling approaches for predicting acute toxicity of organic chemicals against rotifer species
Sci Total Environ. 2025 May 15;977:179350. doi: 10.1016/j.scitotenv.2025.179350. Epub 2025 Apr 10. PMID: 40215635.