Publications
2024
Morphological and Biophysical Study of S100A9 Protein Fibrils by Atomic Force Microscopy Imaging and Nanomechanical Analysis
Biomolecules. 2024 Aug 31;14(9):1091. doi: 10.3390/biom14091091. PMID: 39334857; PMCID: PMC11429797.
The Influence of Lipid Electric Charge on the Binding of Aβ(1-42) Amyloid Peptide to Bilayers in the Liquid-Ordered State
Biomolecules. 2024 Mar 1;14(3):298. doi: 10.3390/biom14030298. PMID: 38540718; PMCID: PMC10967883.
Automated fiducial-based alignment of cryo-electron tomography tilt series in Dynamo
Structure. 2024 Jul 22:S0969-2126(24)00241-7. doi: 10.1016/j.str.2024.07.003. Epub ahead of print. PMID: 39079528.
Nanoscale dynamics of Dynamin 1 helices reveals squeeze-twist deformation mode critical for membrane fission
Proc Natl Acad Sci U S A. 2024 Dec 3;121(49):e2321514121. doi: 10.1073/pnas.2321514121. Epub 2024 Nov 27. PMID: 39602273.
Unlocking a new hydrogen-bonding marker: C-O bond shortening in vicinal diols revealed by rotational spectroscopy
J Chem Phys. 2024 Apr 21;160(15):154304. doi: 10.1063/5.0203123. PMID: 38624119.
EMhub: a web platform for data management and on-the-fly processing in scientific facilities
Acta Crystallogr D Struct Biol. 2024 Nov 1. doi: 10.1107/S2059798324009471. Epub ahead of print. PMID: 39373194.
Mechanism for Vipp1 spiral formation, ring biogenesis and membrane repair
Nat Struct Mol Biol. 2025 Mar;32(3):571-584. doi: 10.1038/s41594-024-01401-8. Epub 2024 Nov 11. PMID: 39528797; PMCID: PMC11919738.
Fluorescence microscopy shadow imaging for neuroscience
Front Cell Neurosci. 2024 Feb 15;18:1330100. doi: 10.3389/fncel.2024.1330100. PMID: 38425431; PMCID: PMC10902105.
Computational method for designing vaccines applied to virus-like particles (VLPs) as epitope carriers
Vaccine. 2024 Jul 11;42(18):3916-3929. doi: 10.1016/j.vaccine.2024.05.025. Epub 2024 May 22. PMID: 38782665.
Generation of a Nonbilayer Lipid Nanoenvironment after Epitope Binding Potentiates Neutralizing HIV-1 MPER Antibody
ACS Appl Mater Interfaces. 2024 Oct 24. doi: 10.1021/acsami.4c13353. Epub ahead of print. PMID: 39446590.
Warfarin-A natural anticoagulant: A review of research trends for precision medication
Phytomedicine. 2024 Feb 23;128:155479. doi: 10.1016/j.phymed.2024.155479. Epub ahead of print. PMID: 38493714.
(1-Deoxy)ceramides in bilayers containing sphingomyelin and cholesterol
Colloids Surf B Biointerfaces. 2024 Aug 8;243:114155. doi: 10.1016/j.colsurfb.2024.114155. Epub ahead of print. PMID: 39137529.
The Effect of Hyperconjugation and Hydrogen Bonding on the Conformers of Methylated Monosaccharides
Chemistry. 2024 Sep 23:e202403166. doi: 10.1002/chem.202403166. Epub ahead of print. PMID: 39312624.
Architecture, Function, Regulation, and Evolution of α-Glucans Metabolic Enzymes in Prokaryotes
REVIEW. Chem Rev. 2024 Apr 24;124(8):4863-4934. doi: 10.1021/acs.chemrev.3c00811. Epub 2024 Apr 12. PMID: 38606812; PMCID: PMC11046441.
Fission of Double-Membrane Tubes under Tension
Biophys J. 2024 Oct 14:S0006-3495(24)00681-7. doi: 10.1016/j.bpj.2024.10.009. Epub ahead of print. PMID: 39410713.
Machine learning guided prediction of warfarin blood levels for personalized medicine based on clinical longitudinal data from cardiac surgery patients: a prospective observational study
Int J Surg. 2024 Oct 1;110(10):6528-6540. doi: 10.1097/JS9.0000000000001734. PMID: 38833337; PMCID: PMC11487003.
2025
A transient contractile seam promotes epithelial sealing and sequential assembly of body segments
Nat Commun. 2025 Apr 29;16(1):4010. doi: 10.1038/s41467-025-58566-z. PMID: 40301337; PMCID: PMC12041241.
Genetic Analysis and Predictive Modeling of COVID-19 Severity in a Hospital-Based Patient Cohort
Biomolecules. 2025 Mar 10;15(3):393. doi: 10.3390/biom15030393. PMID: 40149929; PMCID: PMC11940120.
Viroporins: discovery, methods of study, and mechanisms of host-membrane permeabilization
Review. Q Rev Biophys. 2025 Jan 14;58:e1. doi: 10.1017/S0033583524000192. PMID: 39806799.
Structural recognition and stabilization of tyrosine hydroxylase by the J-domain protein DNAJC12
Nat Commun. 2025 Mar 20;16(1):2755. doi: 10.1038/s41467-025-57733-6. PMID: 40113792; PMCID: PMC11926245.
Exploring the Anti-Chagas Activity of Zanthoxylum chiloperone's Seedlings Through Metabolomics and Protein-Ligand Docking
Plants (Basel). 2025 Mar 18;14(6):954. doi: 10.3390/plants14060954. PMID: 40265836; PMCID: PMC11946004.
Drug Release Nanoparticle Systems Design: Dataset Compilation and Machine Learning Modeling
ACS Applied Materials and Interfaces. Volume 17, Issue 3, Pages 5290 - 5306
A new class of type VI secretion system effectors can carry two toxic domains and are recognized through the WHIX motif for export
PLoS Biol. 2025 Mar 17;23(3):e3003053. doi: 10.1371/journal.pbio.3003053. PMID: 40096082.
First report on Quantitative Structure-Toxicity Relationship modeling approaches for predicting acute toxicity of organic chemicals against rotifer species
Sci Total Environ. 2025 May 15;977:179350. doi: 10.1016/j.scitotenv.2025.179350. Epub 2025 Apr 10. PMID: 40215635.
Artificial Intelligence-Driven Modeling for Hydrogel Three-Dimensional Printing: Computational and Experimental Cases of Study
Polymers (Basel). 2025 Jan 6;17(1):121. doi: 10.3390/polym17010121. PMID: 39795524; PMCID: PMC11723248.
Label-free metabolic fingerprinting of motile mammalian spermatozoa with subcellular resolution
BMC Biol. 2025 Mar 24;23(1):85. doi: 10.1186/s12915-025-02167-1. PMID: 40128804; PMCID: PMC11934609.
The integrity of the lipid bilayer structure is retained in natural occurring deep eutectic solvent water mixtures - a small angle X-ray scattering study
Phys Chem Chem Phys. 2025 May 14;27(19):10248-10258. doi: 10.1039/d5cp00331h. PMID: 40310971.
Selective cargo and membrane recognition by SNX17 regulates its interaction with Retriever
EMBO Rep. 2025 Jan;26(2):470-493. doi: 10.1038/s44319-024-00340-1. Epub 2024 Dec 9. PMID: 39653850; PMCID: PMC11772769.
Long-term memory in lipid assemblies: Rate-independent hysteresis in the ripple-to-liquid-disordered transition of sphingomyelin bilayers
J Chem Phys. 2025 Apr 7;162(13):135101. doi: 10.1063/5.0252051. PMID: 40167004.
Metabolic coordination and phase transitions in spatially distributed multi-cellular systems
Commun Phys 8, 205 (2025). https://doi.org/10.1038/s42005-025-02133-x
High power impulse magnetron sputtering deposited virucide and antibacterial CrN-Cu films and the durability of the antimicrobial activity
Heliyon. 2025 Jan 14;11(2):e41936. doi: 10.1016/j.heliyon.2025.e41936. PMID: 39897851; PMCID: PMC11787653.
Few-shot learning for non-vitrified ice segmentation
Sci Rep. 2025 Feb 14;15(1):5501. doi: 10.1038/s41598-025-86308-0. PMID: 39953118; PMCID: PMC11828963.
Actionable Forecasting as a Determinant of Biological Adaptation
Adv Sci (Weinh). 2025 Apr;12(16):e2413153. doi: 10.1002/advs.202413153. Epub 2025 Feb 27. PMID: 40017047; PMCID: PMC12021117.
Synchrotron-based correlative imaging of metals and proteins in neuronal cells: state of the art and future challenges in neurometallomics
Review. Metallomics. 2025 Feb 6;17(2):mfaf003. doi: 10.1093/mtomcs/mfaf003. PMID: 39890607.
Supramolecular chemistry in solution and solid–gas interfaces: Synthesis and Photophysical Properties of Monocolor and Bicolor Fluorescent Sensors for Barium Tagging in Neutrinoless Double Beta DecayDecay
RSC Appl. Interfaces, 2025. DOI 10.1039/D4LF00227J
Picrotoxin-Induced Epileptogenic Hippocampal Organotypic Slice Cultures (hOTCs)
Neural Stem Cells. Methods in Molecular Biology, vol 2899. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-4386-0_23.
Cryo-EM uncovers a sequential mechanism for RNA polymerase I pausing and stalling at abasic DNA lesions
Nat Commun. 2025 Jun 6;16(1):5254. doi: 10.1038/s41467-025-60536-4. PMID: 40480971; PMCID: PMC12144180.
Determining the Molecular Shape of Progesterone: Insights from Laser Ablation Rotational Spectroscopy
J Phys Chem Lett. 2025 Feb 27:2425-2432. doi: 10.1021/acs.jpclett.4c03618. Epub ahead of print. PMID: 40013933.
Enhancing Generalization and Mitigating Overfitting in Deep Learning for Brain Cancer Diagnosis from MRI
Appl Magn Reson 56, 359–394 (2025). https://doi.org/10.1007/s00723-024-01743-y
A mathematical model of CAR-T cell therapy in combination with chemotherapy for malignant gliomas
Chaos. 2025 Jun 1;35(6):063104. doi: 10.1063/5.0260252. PMID: 40455204.