2025

• Recognizing past shapes: sex differentiation through deep learning on European Upper Palaeolithic hand stencils

  Digital Applications in Archaeology and Cultural Heritage 2025 sep 38, e00453. Doi: 10.1016/j.daach.2025.e00453

• Chaperone-Driven Entropic Separation of Amyloid Nanofilament Bundles

  Phys. Rev. X. 2025; 15;011041

• Structural Basis for Amyloid Fibril Assembly by the Master Cell-Signaling Regulator Receptor-Interacting Protein Kinase 1

  Nat Commun. 2025 Oct 30;16(1):9607. doi: 10.1038/s41467-025-64621-6. PMID: 41168207; PMCID: PMC12575786.

• Distinctive Membrane Accommodation Traits Underpinning the Neutralization Activity of HIV-1 Antibody against MPER

  Mol Pharm. 2025 May 5;22(5):2494-2508. doi: 10.1021/acs.molpharmaceut.4c01341. Epub 2025 Apr 9. PMID: 40202993; PMCID: PMC12056697.

• Adhirons are efficient tools to guide antiviral ligand Discovery

  Commun Biol. 2025 Nov 26;8(1):1755. doi: 10.1038/s42003-025-09137-x. PMID: 41298844; PMCID: PMC12686443.

• The interaction of human serum components with model membranes containing phospholipids and lipopolysaccharides

  J Colloid Interface Sci. 2025 Jun 15;688:150-160. doi: 10.1016/j.jcis.2025.02.131. Epub 2025 Feb 20. PMID: 39999488.

• The minimal chemotactic cell

  Sci Adv. 2025 Jul 25;11(30):eadx9364. doi: 10.1126/sciadv.adx9364. Epub 2025 Jul 25. PMID: 40712034; PMCID: PMC12292904.

• Modelling the prebiotic origins of regulation and agency in evolving protocell ecologies

  Philos Trans R Soc Lond B Biol Sci. 2025 Oct 2;380(1936):20240287. doi: 10.1098/rstb.2024.0287. Epub 2025 Oct 2. PMID: 41035323; PMCID: PMC12489503.

• Quasi-average predictions and regression to the trend: An application to the M6 financial forecasting competition

  International Journal of Forecasting, 2025. doi: 10.1016/j.ijforecast.2024.12.006
  

• PTML models of self assembled ligand free nanoparticle catalysts for cross coupling reactions

  Sci Rep. 2025 Aug 14;15(1):29895. doi: 10.1038/s41598-025-14080-2. PMID: 40813882; PMCID: PMC12354725.

• Transition transferases prime bacterial capsule polymerization

  Nat Chem Biol. 2025 Jan;21(1):120-130. doi: 10.1038/s41589-024-01664-8. Epub 2024 Jul 1. PMID: 38951648; PMCID: PMC11666461.

• The architecture of membrane structures involved in hepatitis C virus genome replication revealed under close-to-native conditions by cryo-electron tomography

  J Gen Virol. 2025 Nov;106(11). doi: 10.1099/jgv.0.002168. PMID: 41196697.

• A transient contractile seam promotes epithelial sealing and sequential assembly of body segments

  Nat Commun. 2025 Apr 29;16(1):4010. doi: 10.1038/s41467-025-58566-z. PMID: 40301337; PMCID: PMC12041241.
  

• Hydrogen-bond-assisted conformational selection of picaridin in the gas phase

  Phys Chem Chem Phys. 2025 Jul 17;27(28):15222-15227. doi: 10.1039/d5cp02108a. PMID: 40613745.

• Rotational Spectrum and Search for Lactonitrile toward Sgr B2(N)

  The Astrophysical Journal 2025 feb 981 64. Doi: 10.3847/1538-4357/adad54

• Genetic Analysis and Predictive Modeling of COVID-19 Severity in a Hospital-Based Patient Cohort

  Biomolecules. 2025 Mar 10;15(3):393. doi: 10.3390/biom15030393. PMID: 40149929; PMCID: PMC11940120.
  

• IFE.PTML: Advancing Neurotherapeutic Nanoparticle Release-System Design for Enhanced Brain Delivery

  Mach. Learn.: Sci. Technol. 2025 6 035065. Doi: 10.1088/2632-2153/ae038a

• Viroporins: discovery, methods of study, and mechanisms of host-membrane permeabilization

  Review. Q Rev Biophys. 2025 Jan 14;58:e1. doi: 10.1017/S0033583524000192. PMID: 39806799.

• Cognitive and Adaptive Functioning of CTNNB1 Syndrome Patients: A Comparison With Autism Spectrum Disorder and Cerebral Palsy

  J Intellect Disabil Res. 2025 Jul;69(7):558-568. doi: 10.1111/jir.13235. Epub 2025 Mar 27. PMID: 40145647; PMCID: PMC12198099.

• Karyopherins Remodel the Dynamic Organization of the Nuclear Pore Complex Transport Barrier

  Nat Cell Biol. 2025 Dec;27(12):2089-2101. doi: 10.1038/s41556-025-01812-9. Epub 2025 Dec 2. PMID: 41331088; PMCID: PMC12717009.

• Structural recognition and stabilization of tyrosine hydroxylase by the J-domain protein DNAJC12

  Nat Commun. 2025 Mar 20;16(1):2755. doi: 10.1038/s41467-025-57733-6. PMID: 40113792; PMCID: PMC11926245.
  

• Ceramide and the membrane-fusion activity of LC3/GABARAP autophagy proteins

  Cell Mol Life Sci. 2025 Jul 19;82(1):283. doi: 10.1007/s00018-025-05811-9. PMID: 40682660.

• Core-excited microsecond isomer in 207Pb

  Physical Review C. American Physical Society (APS). 2025 Aug 1. doi: 10.1103/6l8p-cblc

• Exploring the Anti-Chagas Activity of Zanthoxylum chiloperone's Seedlings Through Metabolomics and Protein-Ligand Docking

  Plants (Basel). 2025 Mar 18;14(6):954. doi: 10.3390/plants14060954. PMID: 40265836; PMCID: PMC11946004.
  

• Hierarchical Structural Organization in Bioinspired Peptide Coacervate Microdroplets

  ACS Nano. 2025 Oct 14;19(40):35724-35739. doi: 10.1021/acsnano.5c12015. Epub 2025 Sep 30. PMID: 41025298.

• Drug Release Nanoparticle Systems Design: Dataset Compilation and Machine Learning Modeling

  ACS Applied Materials and Interfaces. Volume 17, Issue 3, Pages 5290 - 5306

• A resurrected ancestor of Cas12a expands target access and substrate recognition for nucleic acid editing and detection

  Nat Biotechnol. 2025 Oct;43(10):1663-1672. doi: 10.1038/s41587-024-02461-3. Epub 2024 Oct 31. PMID: 39482449.

• Genotype-phenotype characterization and functional reconstitution of pathogenic β-catenin variants from CTNNB1 syndrome patients

  PLoS Genet. 2025 Oct 13;21(10):e1011907. doi: 10.1371/journal.pgen.1011907. PMID: 41082542; PMCID: PMC12543288.

• A new class of type VI secretion system effectors can carry two toxic domains and are recognized through the WHIX motif for export

  PLoS Biol. 2025 Mar 17;23(3):e3003053. doi: 10.1371/journal.pbio.3003053. PMID: 40096082.

• Geometry-aware template matching for cryo-electron tomograms in Dynamo

  Structure. 2025 Sep 4;33(9):1591-1602.e3. doi: 10.1016/j.str.2025.06.009. Epub 2025 Jul 17. PMID: 40680749.

• Machine Learning Approach for Predicting Drug-Like Molecules Targeting Calmodulin Pathway Proteins

  J Chem Inf Model. 2025 Nov 10;65(21):11892-11907. doi: 10.1021/acs.jcim.5c02111. Epub 2025 Oct 22. PMID: 41125631; PMCID: PMC12606648.

• First report on Quantitative Structure-Toxicity Relationship modeling approaches for predicting acute toxicity of organic chemicals against rotifer species

  Sci Total Environ. 2025 May 15;977:179350. doi: 10.1016/j.scitotenv.2025.179350. Epub 2025 Apr 10. PMID: 40215635.
  

• The critical roles of bioactive sphingolipids in inflammation

  J Biol Chem. 2025 Aug;301(8):110475. doi: 10.1016/j.jbc.2025.110475. Epub 2025 Jul 11. PMID: 40653199; PMCID: PMC12340401.

• Artificial Intelligence-Driven Modeling for Hydrogel Three-Dimensional Printing: Computational and Experimental Cases of Study

  Polymers (Basel). 2025 Jan 6;17(1):121. doi: 10.3390/polym17010121. PMID: 39795524; PMCID: PMC11723248.

• BiaPy: accessible deep learning on bioimages

  Nat Methods 22, 1124–1126 (2025). https://doi.org/10.1038/s41592-025-02699-y

• Engineering a single-chain immunoglobulin scaffold loaded with a latent-releasable cytotoxic pore-forming peptide

  Commun Biol. 2025 Nov 25;8(1):1665. doi: 10.1038/s42003-025-09066-9. PMID: 41291002; PMCID: PMC12647727.

• Label-free metabolic fingerprinting of motile mammalian spermatozoa with subcellular resolution

  BMC Biol. 2025 Mar 24;23(1):85. doi: 10.1186/s12915-025-02167-1. PMID: 40128804; PMCID: PMC11934609.

• The puzzle of sphingolipids and cholesterol under the atomic force microscope: bilayer thicknesses and breakthrough forces

  Chem Phys Lipids. 2025 Sep;271:105527. doi: 10.1016/j.chemphyslip.2025.105527. Epub 2025 Jul 15. PMID: 40675432.

• Nanoscale Analysis beyond Imaging by Atomic Force Microscopy: Molecular Perspectives on Oncology and Neurodegeneration

  Small Sci. 2025 Oct 12;5(11):2500351. doi: 10.1002/smsc.202500351. PMID: 41256193; PMCID: PMC12622512.

• The integrity of the lipid bilayer structure is retained in natural occurring deep eutectic solvent water mixtures - a small angle X-ray scattering study

  Phys Chem Chem Phys. 2025 May 14;27(19):10248-10258. doi: 10.1039/d5cp00331h. PMID: 40310971.