Publications
2022
2,2,3,3,3-Pentafluoro-1-propanol and its dimer: structural diversity, conformational conversion, and tunnelling motion
Physical chemistry chemical physics (2022); 24(24):14975-14984. doi: 10.1039/d2cp01895k
Pathophysiology of Atherosclerosis
Review, Int. J. Mol. Sci. (2022), 23(6), 3346; doi.org/10.3390/ijms23063346
Structure and dynamics of methacrylamide, a computational and free-jet rotational spectroscopic study
Journal of Molecular Structure (2022), doi: 10.1016/j.molstruc.2021.131391
Towards rational nanomaterial design by predicting drug–nanoparticle system interaction vs. bacterial metabolic networks
Environ. Sci.: Nano, Advance Article (2022) doi:10.1039/D1EN00967B
Ceramide enhances binding of LC3/GABARAP autophagy proteins to cardiolipin-containing membranes
International Journal of Biological Macromolecules (2022)
Volume 217, 30, Pages 748-760, doi.org/10.1016/j.ijbiomac.2022.07.032The P. aeruginosa effector Tse5 forms membrane pores disrupting the membrane potential of intoxicated bacteria
Article-preprint, Communications Biology (2022), doi: 10.1038/s42003-022-04140
Shedding light on membrane rafts structure and dynamics in living cells
Review, Biochim Biophys Acta Biomembr. 1864(1) 183813 (2022) doi:10.1016/j.bbamem.2021.183813
LC3/GABARAP binding to fluid membranes is potentiated by ceramide
Autophagy (2022), doi: 10.1080/15548627.2022.2136821
Leu22_Leu23 Duplication at the Signal Peptide of PCSK9 Promotes Intracellular Degradation of LDLr and Autosomal Dominant Hypercholesterolemia
Arteriosclerosis, Thrombosis, and Vascular Biology. (2022); 42:e203–e216, doi.org/10.1161/ATVBAHA.122.315499
Prediction of Antileishmanial Compounds: General Model, Preparation, and Evaluation of 2-Acylpyrrole Derivatives
Journal of Chemical Information and Modeling (2022), doi: 10.1021/acs.jcim.2c00731
Multi-output chemometrics model for gasoline compounding
Fuel, Volume 310, Part A, 122274 (2022). doi: 10.1016/j.fuel.2021.122274
LC3 subfamily in cardiolipin-mediated mitophagy: a comparison of the LC3A, LC3B and LC3C homologs
Autophagy (2022), doi.org/10.1080/15548627.2022.2062111
Probing Single-Cell Fermentation Fluxes and Exchange Networks via pH-Sensing Hybrid Nanofibers
ACS Nano 2022, doi.org/10.1021/acsnano.2c06114
Relationship between fitness and heterogeneity in exponentially growing microbial populations
Biophysical Journal (2022), doi.org/10.1016/j.bpj.2022.04.012
CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase
Nature Communications (2022); 13(1):6185. doi: 10.1038/s41467-022-33987-2
Cholangiocarcinoma progression depends on the uptake and metabolization of extracellular lipids.
Hepatology. Accepted Author Manuscript, (2022) doi: 10.1002/hep.32344
Lipoprotein (a) in hereditary hypercholesterolemia: Influence of the genetic cause, defective gene and type of mutation
Atherosclerosis (2022), Volume 349, Pages 211-218, doi.org/10.1016/j.atherosclerosis.2021.08.009
Characterization of molecular biomarkers in cerebrospinal fluid and serum of E46K-SNCA mutation carriers
Parkinsonism and Related Disorders (2022), doi: 10.1016/j.parkreldis.2022.01.024
Conformationally Restricted ß-Sheet Breaker Peptides Incorporating Cyclic α-Methylisoserine Sulfamidates
Chemistry – A European JournalVolume 29, Issue 9 e202202913
Plasma membrane effects of sphingolipid-synthesis inhibition by myriocin in CHO cells: a biophysical and lipidomic study
Sci Rep 12, 955 (2022) doi: 10.1038/s41598-021-04648-z
Bond Length Alternation and Internal Dynamics in Model Aromatic Substituents of Lignin
ChemPhysChem. 23 (6) e202100808 (2022) doi:10.1002/cphc.202100808
Liquid-crystalline, liquid-ordered, rippled and gel lipid bilayer phases as observed with nile red fluorescence
Journal of Molecular Liquids (2022)
Volume 363, 119874, doi.org/10.1016/j.molliq.2022.119874Rotational Spectroscopy of 2-Furoic Acid and Its Dimer: Conformational Distribution and Double Proton Tunneling
ChemPhysChem (2022), doi.org/10.1002/cphc.202200176
Robustness of DNA looping across multiple cell divisions in individual bacteria
National Academy of Sciences (2022), 119 (33) e2200061119; doi: 10.1073/pnas.2200061119
Boosting Cholesterol Efflux from Foam Cells by Sequential Administration of rHDL to Deliver MicroRNA and to Remove Cholesterol in a Triple-Cell Two-Dimensional Atherosclerosis Model
Small. Accepted Author Manuscript, (2022) doi: 10.1039/d1en00967b
Chapter 6 - Cholesterol and ceramide: an unlikely pairCholesterol and ceramide: an unlikely pair
Cholesterol, From Chemistry and Biophysics to the Clinic (2022), Pages 111-126, doi.org/10.1016/B978-0-323-85857-1.00017-1
Four Cholesterol-Recognition Motifs in the Pore-Forming and Translocation Domains of Adenylate Cyclase Toxin Are Essential for Invasion of Eukaryotic Cells and Lysis of Erythrocytes. International journal of molecular sciences, 2022, 23(15)
doi.org/10.3390/ijms23158703
ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation
Journal of Structural Biology (2022), doi.org/10.1016/j.jsb.2022.107872
Reply to Roy and Pucadyil: A gain of function by a GTPase-impaired Drp1
PNAS (2022), doi.org/10.1073/pnas.2202391119
Thermal effects of plumage coloration
Review article, Ibis (2022), doi: 10.1111/ibi.13100
Cryo-EM structure of translesion DNA synthesis polymerase ζ with a base pair mismatch
Nature Communications,13, 1050 (2022) doi: 10.1038/s41467-022-28644-7
Quantitative super-resolution imaging of pathological aggregates reveals distinct toxicity profiles in different synucleinopathies
Proceedings of the National Academy of Sciences of the United States of America (2022) doi/10.1073/pnas.2205591119
Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes
Neuroinformatics. 2022 Apr;20(2):437-450. doi: 10.1007/s12021-021-09556-1.
Machine Learning Study of Metabolic Networks vs ChEMBL Data of Antibacterial Compounds
Molecular Pharmaceutics (2022), DOI: 10.1021/acs.molpharmaceut.2c00029
Conformational rearrangements regulating the DNA repair protein APE1
Int. J. Mol. Sci. (2022), 23(14), 8015; doi.org/10.3390/ijms23148015
Diffusion and interaction dynamics of the cytosolic peroxisomal import receptor PEX5
Biophysical Reports (2022), doi:10.1016/j.bpr.2022.100055
Role of Protein–Lipid Interactions in Viral Entry
Review, Adv Biol (Weinh). 6(3):e2101264 (2022) doi: 10.1002/adbi.202101264.
Shaping the heart with mechanosensitive shrinking cells
Developmental Cell (2022), doi.org/10.1016/j.devcel.2022.02.016
Deep learning based domain adaptation for mitochondria segmentation on EM volumes
Comput Methods Programs Biomed. 2022 Jul;222:106949. doi: 10.1016/j.cmpb.2022.106949
Lipoprotein(a) in heterozygous familial hypercholesterolemia. Influence of the causative gene and type of mutation
Atherosclerosis (2022), DOI: 10.1016/j.atherosclerosis.2021.08.009