Publications
2012
Binding of b-Amyloid (1–42) peptide to negatively charged phospholipid membranes in the liquid-ordered state: modeling and experimental studies.
Biophys. J. 103, 453–463 (2012).
Facilitation of AMPA receptor synaptic delivery as a molecular mechanism for cognitive enhancement.
PLoS Biol 10, e1001262, doi:10.1371/journal.pbio.1001262 (2012)
Ribose Found in the Gas Phase
Angew. Chem. Int. Ed., 51, 3119-3124 (2012)
Mechanistic insights into the retaining glucosyl-3-phosphoglycerate synthase from mycobacteria.
J Biol. Chem. 287, 24649-24661 (2012).
Far-from-equilibrium processes without net thermal exchange via energy sorting.
J. Chem. Phys. 136, 064115 (2012).
Lipid bilayers in the gel phase become saturated by Triton X-100 at lower surfactant concentrations than those in the fluid phase.
Biophys. J. 102 1–7 (2012).
Molecular recognition of a single sphingolipid species by a protein’s transmembrane domain.
Nature 481, 525-529 (2012)
Viroporins: structure and biological functions.
Nat Rev Microbiol. 10, 563-74 (2012).
Model systems of precursor cellular membranes: long-chain alcohols stabilize spontaneously formed oleic acid vesicles.
Biophys. J. 102, 278–286 (2012).
Recognition of membrane-bound fusion-peptide/MPER complexes by the HIV-1 neutralizing 2F5 antibody: implications for Anti-2F5 immunogenicity.
PLoS One, 7, e52740. doi: 10.1371 (2012).
2011
Dynamin: functional design of a membrane fission catalyst.
Annu. Rev. Cell Dev. Biol. 27, 79–105 (2011).
Lipid polymorphisms and membrane shape.
Cold Spring Harb Perspect Biol ;3:a004747 (2011).
The nuclear transport machinery recognizes nucleoplasmin-histone complexes.
Biochemistry 50, 7104-7110 (2011).
Specificity of intramembrane protein-lipid interactions.
Cold Spring Harb Perspect Biol.3 doi:pii: a004705 (2011)
A conventional and 2DCOS infrared approach to the kinetics of protein misfolding.
Current Protein & Peptide Science 12, 181-187 (2011).
Membrane insertion stabilizes the structure of TrwB, the R388 conjugative plasmid coupling protein.
Biochim. Biophys. Acta 1808, 1032-1039 (2011).
Reconstitution of proapoptotic BAK function in liposomes reveals a dual role for mitochondrial lipids in the BAK-driven membrane permeabilization process.
J. Biol. Chem. 286, 8213-8230 (2011).
Structural insights into the oligomerization and architecture of eukaryotic membrane pore-forming toxins.
Structure 19, 181-191 (2011).
Sensing the anomeric effect in a solvent-free environment
Nature volume 469, pages 76–79 (2011)
2010
NMR assignment and backbone dynamics of the pore-forming domain of colicin A.
Biomol NMR assign DOI 10.1007/s12104-009-9202-4 (2010).
2022
Four Cholesterol-Recognition Motifs in the Pore-Forming and Translocation Domains of Adenylate Cyclase Toxin Are Essential for Invasion of Eukaryotic Cells and Lysis of Erythrocytes. International journal of molecular sciences, 2022, 23(15)
doi.org/10.3390/ijms23158703
ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation
Journal of Structural Biology (2022), doi.org/10.1016/j.jsb.2022.107872
Reply to Roy and Pucadyil: A gain of function by a GTPase-impaired Drp1
PNAS (2022), doi.org/10.1073/pnas.2202391119
Thermal effects of plumage coloration
Review article, Ibis (2022), doi: 10.1111/ibi.13100
Cryo-EM structure of translesion DNA synthesis polymerase ζ with a base pair mismatch
Nature Communications,13, 1050 (2022) doi: 10.1038/s41467-022-28644-7
Quantitative super-resolution imaging of pathological aggregates reveals distinct toxicity profiles in different synucleinopathies
Proceedings of the National Academy of Sciences of the United States of America (2022) doi/10.1073/pnas.2205591119
Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes
Neuroinformatics. 2022 Apr;20(2):437-450. doi: 10.1007/s12021-021-09556-1.
Machine Learning Study of Metabolic Networks vs ChEMBL Data of Antibacterial Compounds
Molecular Pharmaceutics (2022), DOI: 10.1021/acs.molpharmaceut.2c00029
Conformational rearrangements regulating the DNA repair protein APE1
Int. J. Mol. Sci. (2022), 23(14), 8015; doi.org/10.3390/ijms23148015
Diffusion and interaction dynamics of the cytosolic peroxisomal import receptor PEX5
Biophysical Reports (2022), doi:10.1016/j.bpr.2022.100055
Role of Protein–Lipid Interactions in Viral Entry
Review, Adv Biol (Weinh). 6(3):e2101264 (2022) doi: 10.1002/adbi.202101264.
Shaping the heart with mechanosensitive shrinking cells
Developmental Cell (2022), doi.org/10.1016/j.devcel.2022.02.016
Deep learning based domain adaptation for mitochondria segmentation on EM volumes
Comput Methods Programs Biomed. 2022 Jul;222:106949. doi: 10.1016/j.cmpb.2022.106949
Lipoprotein(a) in heterozygous familial hypercholesterolemia. Influence of the causative gene and type of mutation
Atherosclerosis (2022), DOI: 10.1016/j.atherosclerosis.2021.08.009
The enigma of phosphoinositides and their derivatives: Their role in regulation of subcellular compartment morphology
BBA - Biomembranes 1864 (2022) 183780, (2022) doi: 10.1016/j.bbamem.2021.183780
Engineering pan–HIV-1 neutralization potency through multispecific antibody avidity
PNAS (2022), doi.org/10.1073/pnas.2112887119
The Myth of the Annular Lipids
Review, Biomedicines (2022), 10(11):2672, doi: 10.3390/biomedicines10112672
First observation of a brood patch on a male sunbird (Chalcomitra amethystina)
J Ornithol (2022). https://doi.org/10.1007/s10336-022-01964-7
The fusion of quantitative molecular proteomics and immune-oncology: a step towards precision medicine in cancer therapeutics
Review, Federation of European Biochemical Societies letters (2022), doi: 10.1002/1873-3468.14480
A quantitative biophysical principle to explain the 3D cellular connectivity in curved epithelia
Cell Syst. 2022 Aug 17;13(8):631-643.e8. doi: 10.1016/j.cels.2022.06.003.