Publications
2024
The Effect of Hyperconjugation and Hydrogen Bonding on the Conformers of Methylated Monosaccharides
Chemistry. 2024 Sep 23:e202403166. doi: 10.1002/chem.202403166. Epub ahead of print. PMID: 39312624.
Architecture, Function, Regulation, and Evolution of α-Glucans Metabolic Enzymes in Prokaryotes
REVIEW. Chem Rev. 2024 Apr 24;124(8):4863-4934. doi: 10.1021/acs.chemrev.3c00811. Epub 2024 Apr 12. PMID: 38606812; PMCID: PMC11046441.
Fission of Double-Membrane Tubes under Tension
Biophys J. 2024 Oct 14:S0006-3495(24)00681-7. doi: 10.1016/j.bpj.2024.10.009. Epub ahead of print. PMID: 39410713.
Machine learning guided prediction of warfarin blood levels for personalized medicine based on clinical longitudinal data from cardiac surgery patients: a prospective observational study
Int J Surg. 2024 Oct 1;110(10):6528-6540. doi: 10.1097/JS9.0000000000001734. PMID: 38833337; PMCID: PMC11487003.
The N-terminal region of the ATG8 autophagy protein LC3C is essential for its membrane fusion properties
Int J Biol Macromol. 2024 Feb 1;262(Pt 1):129835. doi: 10.1016/j.ijbiomac.2024.129835. Epub ahead of print. PMID: 38302024.
Interplay between hippocampal TACR3 and systemic testosterone in regulating anxiety-associated synaptic plasticity.
Mol Psychiatry. 2024 Mar;29(3):686-703. doi: 10.1038/s41380-023-02361-z. Epub 2023 Dec 22. PMID: 38135756; PMCID: PMC11153148.
A resurrected ancestor of Cas12a expands target access and substrate recognition for nucleic-acid editing and detection
Nat Biotechnol. 2024 Oct 31. doi: 10.1038/s41587-024-02461-3. Epub ahead of print. PMID: 39482449.
MLe-KCNQ2: An Artificial Intelligence Model for the Prognosis of Missense KCNQ2 Gene Variants
Int J Mol Sci. 2024 Mar 2;25(5):2910. doi: 10.3390/ijms25052910. PMID: 38474157; PMCID: PMC10932340.
Structural and biochemical characterization of the C-terminal region of the human RTEL1 helicase
Protein Sci. 2024 Sep;33(9):e5093. doi: 10.1002/pro.5093. PMID: 39180489.
Editorial: Human brain organoids to model neurodegenerative diseases at the BOSS23 Brain Organoid Summer School
Editorial. Front Cell Neurosci. 2024 Nov 5;18:1501036. doi: 10.3389/fncel.2024.1501036. PMID: 39564190; PMCID: PMC11573503.
Interfacial Stresses on Droplet Interface Bilayers Using Two Photon Fluorescence Lifetime Imaging Microscopy
J Colloid Interface Sci. 2024 Jan;653(Pt B):1196-1204. Doi: 10.1016/j.jcis.2023.09.092.
Structural effects of oxidation on sugars: glucose as a precursor of gluconolactone and glucuronolactone
Chem Commun (Camb). 2024 Apr 25. doi: 10.1039/d4cc00735b. Epub ahead of print. PMID: 38661549.
Advancing Food Packaging: Exploring Cyto-Toxicity of Shape Memory Polyurethanes
Materials (Basel). 2024 Sep 28;17(19):4770. doi: 10.3390/ma17194770. PMID: 39410342; PMCID: PMC11478179.
A two-step mechanism for the binding of the HIV-1 MPER epitope by the 10E8 antibody onto biosensor-supported lipid bilayers
FEBS Lett. 2024 Feb 9. doi: 10.1002/1873-3468.14814. Epub ahead of print. PMID: 38339834.
Multi-Endpoint Acute Toxicity Assessment of Organic Compounds Using Large-Scale Machine Learning Modeling
Environ Sci Technol. 2024 Jun 11;58(23):10116-10127. doi: 10.1021/acs.est.4c01017. Epub 2024 May 26. PMID: 38797941.
Purification of functional recombinant human mitochondrial Hsp60
Methods Enzymol. 2024;707:423-440. doi: 10.1016/bs.mie.2024.07.049. Epub 2024 Aug 31. PMID: 39488385.
2025
Exploring the Anti-Chagas Activity of Zanthoxylum chiloperone's Seedlings Through Metabolomics and Protein-Ligand Docking
Plants (Basel). 2025 Mar 18;14(6):954. doi: 10.3390/plants14060954. PMID: 40265836; PMCID: PMC11946004.
Drug Release Nanoparticle Systems Design: Dataset Compilation and Machine Learning Modeling
ACS Applied Materials and Interfaces. Volume 17, Issue 3, Pages 5290 - 5306
A new class of type VI secretion system effectors can carry two toxic domains and are recognized through the WHIX motif for export
PLoS Biol. 2025 Mar 17;23(3):e3003053. doi: 10.1371/journal.pbio.3003053. PMID: 40096082.
First report on Quantitative Structure-Toxicity Relationship modeling approaches for predicting acute toxicity of organic chemicals against rotifer species
Sci Total Environ. 2025 May 15;977:179350. doi: 10.1016/j.scitotenv.2025.179350. Epub 2025 Apr 10. PMID: 40215635.
Artificial Intelligence-Driven Modeling for Hydrogel Three-Dimensional Printing: Computational and Experimental Cases of Study
Polymers (Basel). 2025 Jan 6;17(1):121. doi: 10.3390/polym17010121. PMID: 39795524; PMCID: PMC11723248.
Label-free metabolic fingerprinting of motile mammalian spermatozoa with subcellular resolution
BMC Biol. 2025 Mar 24;23(1):85. doi: 10.1186/s12915-025-02167-1. PMID: 40128804; PMCID: PMC11934609.
The integrity of the lipid bilayer structure is retained in natural occurring deep eutectic solvent water mixtures - a small angle X-ray scattering study
Phys Chem Chem Phys. 2025 May 14;27(19):10248-10258. doi: 10.1039/d5cp00331h. PMID: 40310971.
Selective cargo and membrane recognition by SNX17 regulates its interaction with Retriever
EMBO Rep. 2025 Jan;26(2):470-493. doi: 10.1038/s44319-024-00340-1. Epub 2024 Dec 9. PMID: 39653850; PMCID: PMC11772769.
Long-term memory in lipid assemblies: Rate-independent hysteresis in the ripple-to-liquid-disordered transition of sphingomyelin bilayers
J Chem Phys. 2025 Apr 7;162(13):135101. doi: 10.1063/5.0252051. PMID: 40167004.
Metabolic coordination and phase transitions in spatially distributed multi-cellular systems
Commun Phys 8, 205 (2025). https://doi.org/10.1038/s42005-025-02133-x
High power impulse magnetron sputtering deposited virucide and antibacterial CrN-Cu films and the durability of the antimicrobial activity
Heliyon. 2025 Jan 14;11(2):e41936. doi: 10.1016/j.heliyon.2025.e41936. PMID: 39897851; PMCID: PMC11787653.
Few-shot learning for non-vitrified ice segmentation
Sci Rep. 2025 Feb 14;15(1):5501. doi: 10.1038/s41598-025-86308-0. PMID: 39953118; PMCID: PMC11828963.
Actionable Forecasting as a Determinant of Biological Adaptation
Adv Sci (Weinh). 2025 Apr;12(16):e2413153. doi: 10.1002/advs.202413153. Epub 2025 Feb 27. PMID: 40017047; PMCID: PMC12021117.
Synchrotron-based correlative imaging of metals and proteins in neuronal cells: state of the art and future challenges in neurometallomics
Review. Metallomics. 2025 Feb 6;17(2):mfaf003. doi: 10.1093/mtomcs/mfaf003. PMID: 39890607.
Supramolecular chemistry in solution and solid–gas interfaces: Synthesis and Photophysical Properties of Monocolor and Bicolor Fluorescent Sensors for Barium Tagging in Neutrinoless Double Beta DecayDecay
RSC Appl. Interfaces, 2025. DOI 10.1039/D4LF00227J
Picrotoxin-Induced Epileptogenic Hippocampal Organotypic Slice Cultures (hOTCs)
Neural Stem Cells. Methods in Molecular Biology, vol 2899. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-4386-0_23.
Cryo-EM uncovers a sequential mechanism for RNA polymerase I pausing and stalling at abasic DNA lesions
Nat Commun. 2025 Jun 6;16(1):5254. doi: 10.1038/s41467-025-60536-4. PMID: 40480971; PMCID: PMC12144180.
Determining the Molecular Shape of Progesterone: Insights from Laser Ablation Rotational Spectroscopy
J Phys Chem Lett. 2025 Feb 27:2425-2432. doi: 10.1021/acs.jpclett.4c03618. Epub ahead of print. PMID: 40013933.
Enhancing Generalization and Mitigating Overfitting in Deep Learning for Brain Cancer Diagnosis from MRI
Appl Magn Reson 56, 359–394 (2025). https://doi.org/10.1007/s00723-024-01743-y
A mathematical model of CAR-T cell therapy in combination with chemotherapy for malignant gliomas
Chaos. 2025 Jun 1;35(6):063104. doi: 10.1063/5.0260252. PMID: 40455204.
The interaction of human serum components with model membranes containing phospholipids and lipopolysaccharides
J Colloid Interface Sci. 2025 Jun 15;688:150-160. doi: 10.1016/j.jcis.2025.02.131. Epub 2025 Feb 20. PMID: 39999488.
Neuroglia in neurodegeneration: Alzheimer, Parkinson, and Huntington disease
Review. Handb Clin Neurol. 2025;210:9-44. doi: 10.1016/B978-0-443-19102-2.00012-0. PMID: 40148060.
AQUA Tox: A web tool for predicting aquatic toxicity in rotifer species using intrinsic explainable models
J Hazard Mater. 2025 Jul 15;492:138050. doi: 10.1016/j.jhazmat.2025.138050. Epub 2025 Mar 25. PMID: 40157185.
Electrophysiological dissection of the ion channel activity of the Pseudomonas aeruginosa ionophore protein toxin Tse5
Chem Phys Lipids. 2025 Mar;267:105472. doi: 10.1016/j.chemphyslip.2025.105472. Epub 2025 Jan 6. PMID: 39778700.